Publications

Publications directly related to BAMS

  • Bota M. & Swanson L.W. (2008). BAMS Neuroanatomical Ontology: design and implementation, Frontiers in Neuroinformatics (in press).
    		•  Description of BAMS Ontology.
  • Bota M. & Swanson L.W. (2007). The neuron classification problem, Brain Res Rev May 26.
    		•  Description of a new method of neurons classification, and of the BAMS Neuron Ontology module.
  • Bota M. & Swanson L.W. (2007). Online workbenches for neural network connections, J Comp Neurol 500(5):807-814.
    		•  Review of the most important online neuroinformatics systems.
  • Bota M. & Swanson L.W. (2006). A new module for on-line manipulation and display of molecular information in the Brain Architecture management System, Neuroinformatics 4(4):275-298.
    		•  Description of BAMS Molecules module.
  • Bota M., Dong H.-W. & Swanson L.W. (2005). Brain Architecture Management System, Neuroinformatics 3(1):15-48.
    		•  Description of BAMS general structure and functionality.
  • Bota M., Dong H.-W. & Swanson L.W. (2003). From gene networks to brain networks, Nat Neurosci 6(8):795-799.
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    Publications that refer to BAMS

  • Dinov I.D. et al. (2006). LONI visualization environment, J Digit Imaging 19(2): 148-58.
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  • Mackenzie-Graham A. et al. (2004). A multimodal, multidimensional atlas of the C57BL/6J mouse brain, J Anat 204(2):93-102.
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  • Mackenzie-Graham A. et al. (2003). The informatics of a C57BL/6J mouse brain atlas, Neuroinformatics 1(4): 397-410.
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  • Larson S.D. & Martone M.E. (2007). Rule-Based Reasoning with a Multi-Scale Neuroanatomical Ontology, OWL: Experiences and Directions, Innsbruck, Austria, CEUR Workshop Proceedings, ISSN 1613-0073.
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    Publications historically related to BAMS

  • Bota M. & Arbib. M.A. (2004). Integrating databases and expert systems for the analysis of brain structures: connections, similarities, and homologies , Neuroinformatics 2(1): 19-58.
    		•  Description of structure and functionality of the Neurohomology Database.